Thomas Mailund
Publications
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Research
- Simonsen, M., Mailund, T., Pedersen, C.S. 2010, 'Building Very Large Neighbour-Joining Trees', in BIOINFORMATICS 2010, Portugal, pp. 26.Conference article peer reviewed
- Besenbacher, S., Mailund, T., Pedersen, C.S. 2009, 'A fast algorithm for genome wide haplotype pattern mining', presented at 7th Asia-Pacific Bioinformatics Conference (APBC), 7 edn, Beijing, 13.1.2009 - 16.1.2009. Conference article peer reviewed
- Besenbacher, S., Mailund, T., Pedersen, C.S. 2009, 'A fast algorithm for genome wide haplotype pattern mining', BMC Bioinformatics, vol. 10 no. S1, Peer reviewed article
- Dutheil, J., Ganapathy, G., Hobolth, A., Mailund, T., Uyenoyama, M., Schierup, M.H. 2009, 'Ancestral population genomics', Genetics, vol. 183 no. 1, pp. 259–274.Peer reviewed article
- Mailund, T., Nielsen, J., Pedersen, C.S. 2009, 'A sub-cubic time algorithm for computing the quartet distance between two general trees', in Proceedings of IJCBS 2009, IEEE Computer Society, pp. 565-568.Conference article peer reviewed
- Simonsen, M., Mailund, T., Pedersen, C.S. 2009, 'Building very large neighbour-joining trees', presented at 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) & 8th European Conference on Computational Biology (ECCB), 17 edn, Stockholm, 27.6.2009 - 2.7.2009. Poster
- Schierup, M.H., Mailund, T., Li, H., Wang, J., Tjønneland, A., Vogel, U., Bolund, L., Nexø, B.A. 2009, 'Haplotype frequencies in a sub-region of chromosome 19q13.3, related to risk and prognosis of cancer, differ dramatically between ethnic groups', BMC Medical Genetics, vol. 10, Peer reviewed article
- Besenbacher, S., Mailund, T., Schierup, M.H. 2009, 'Local phylogeny mapping of quantitative traits: Higher accuracy and better ranking than single marker association in genomewide scans', Genetics, vol. 181, pp. 747-753.Peer reviewed article
- Emily, M., Mailund, T., Hein, J., Schauser, L., Schierup, M.H. 2009, 'Using biological networks to search for interacting loci in genomewide association studies', European Journal of Human Genetics, Peer reviewed article
- Stissing, M., Mailund, T., Pedersen, C.S., Brodal, G.S., Fagerberg, R. 2008, 'Computing the all-pairs quartet distance on a set of evolutionary trees', Journal of Bioinformatics and Computational Biology, vol. 6 no. 1, pp. 37-50.Peer reviewed article
- Ding, Z., Mailund, T., Song, Y. 2008, 'Efficient Whole-Genome Association Mapping using Local Phylogenies for Unphased Genome Data', Bioinformatics, pp. 2215-2221.Peer reviewed article
- de Groot, S., Mailund, T., Lunter, G., Hein, J. 2008, 'Investigating Selection on Viruses: A Statistical Alignment Approach', BMC Bioinformatics, vol. 9 no. 308, Peer reviewed article
- Besenbacher, S., Mailund, T., Schierup, M.H. 2008, 'Local Phylogeny Mapping of Quantitative Traits: Higher Accuracy and Better Ranking Than Single Marker Association in Genomewide Scans', Genetics, Peer reviewed article
- Simonsen, M., Mailund, T., Pedersen, C.S. 2008, 'Rapid Neighbour-Joining', in Proceedings of the 8th International Workshop on Algorithms in Bioinformatics (WABI), pp. 113-122.Conference article peer reviewed
- Nielsen, J., Mailund, T. 2008, 'SNPFile - A software library and file format for large scale association mapping and population genetics studies', BMC Bioinformatics, Peer reviewed article
- McCauley, S., de Groot, S., Mailund, T., Hein, J. 2007, 'Annotation of selection strengths in viral genomes', Bioinformatics, vol. 23 no. 22, pp. 2978-2986.Peer reviewed article
- de Groot, S., Mailund, T., Hein, J. 2007, 'Comparative Annotation of Viral Genomes with Non-Conserved Gene Structure', Bioinformatics, vol. 23 no. 9, pp. 1080-1089.Peer reviewed article
- Stissing, M., Mailund, T., Pedersen, C.N.S., Brodal, G.S., Fagerberg, R. 2007, 'Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees', in Proceedings of the 5th Asia-Pacific Bioinformatics Conference (APBC), pp. 91-100.Conference article peer reviewed
- Stissing, M., Pedersen, C.N.S., Mailund, T., Brodal, G.S. 2007, 'Computing the Quartet Distance between Evolutionary Trees of Bounded Degree', in Proceedings of the 5th Asia-Pacific Bioinformatics Conference (APBC), pp. 101-110.Conference article peer reviewed
- Mailund, T., Pedersen, C.N.S., Bardino, J., Vinter, B., Karlsen, H. 2007, 'Experiences with GeneRecon on MiG', Future Generation Computer Systems, vol. 23, pp. 580-586.Peer reviewed article
- Hobolth, A., Christensen, O.F., Mailund, T., Schierup, M.H. 2007, 'Genomic relationships and speciation times of human, chimpanzee and gorilla inferred from a coalescent hidden Markov model', PLoS Genetics, vol. 3 no. 2, Peer reviewed article
- Davies, J., Simancik, F., Lyngsø, R., Mailund, T., Hein, J. 2007, 'On Recombination-Induced Multiple and Simultaneous Coalescent Events', Genetics, vol. 177, pp. 2151-2160.Peer reviewed article
- Christiansen, C., Mailund, T., Pedersen, C.N.S., Randers, M., Stissing, M. 2006, 'Fast Calculation of the Quartet Distance Between Trees of Arbitrary Degrees', Algorithms for Molecular Biology, vol. 1 no. 16, Peer reviewed article
- Mailund, T., Schierup, M.H., Pedersen, C.N.S., Madsen, J.N., Hein, J., Schauser, L. 2006, 'GeneRecon—A coalescent based tool for fine-scale association mapping', Bioinformatics, vol. 22 no. 18, pp. 2317–2318.Peer reviewed article
- Mailund, T. 2006, GeneRecon Users' Manual — A coalescent based tool for fine-scale association mapping, Working paper/preprint
- Hobolth, A., Christensen, O.F., Mailund, T., Schierup, M.H. 2007, 'Genomic Relationships and Speciation Times of Human, Chimpanzee and Gorilla inferred from a Coalescent Hidden Markov Model', presented at Beyond the HapMap, 3 edn, Boston, 7.5.2006 - 10.5.2006. Poster
- Mailund, T. 2006, Getting Started with Blossoc, Working paper/preprint
- Mailund, T., Schauser, L. 2006, Getting Started with GeneRecon — An Introduction to the Association Mapping Tool GeneRecon, Working paper/preprint
- Mailund, T. 2006, Getting Started with HapCluster, Working paper/preprint
- Mailund, Brodal, G.S., Fagerberg, R., Pedersen, C.N.S., Phillips, D. 2006, 'Recrafting the Neighbor-Joining Method', BMC Bioinformatics, vol. 7 no. 29, Peer reviewed article
- Bataillon, T., Mailund, T., Thorlacius, S., Steingrimsson, E., Rafnar, T., Halldorsson, M., Calian, V., Schierup, M.H. 2006, 'The effective size of the Icelandic population and the prospects for LD mapping: inference from unphased microsatellite markers', European Journal of Human Genetics, vol. 14, pp. 1044–1053.Peer reviewed article
- Mailund, T., Besenbacher, S., Schierup, M.H. 2006, 'Whole genome association mapping by incompatibilities and local perfect phylogenies', BMC Bioinformatics, vol. 7 no. 454, Peer reviewed article
- Mailund, Schierup, M.H., Pedersen, C.N.S., Mechlenborg, P., Madsen, J.N., Schauser, L. 2005, 'CoaSim: A Flexible Environment for Simulating Genetic Data under Coalescent Models', BMC Bioinformatics, vol. 6 no. 252, Peer reviewed article
- Mailund, T. 2006, CoaSim Guile Manual — Using the Guile-based CoaSim Simulator, Working paper/preprint
- Christiansen, C., Mailund, Pedersen, C.N.S., Randers, M. 2005, 'Computing the Quartet Distance between Trees of Arbitrary Degree', in Proceedings of the 5th International Workshop on Algorithms in Bioinformatics (WABI), pp. 77-88.Conference article peer reviewed
- Mailund, T. 2005, Getting Started with CoaSim — An Introduction to the Simulator CoaSim, Working paper/preprint
- Mailund, Pedersen, C.N.S., Bardino, J., Vinter, B., Karlsen, H.H. 2005, 'Initial experiences with GeneRecon on MiG', in Proceedings of The 2005 International Conference on Grid Computing and Applications (GCA), Conference article peer reviewed
- Wernersson, R., Schierup, M.H., Jørgensen, F.G., Gorodkin, J., Panitz, F., Staerfeldt, H., Christensen, O.F., Mailund, Hornshøj, H., Klein, A., Jun, W., Liu, B., Hu, S., Dong, W., Li, W., Wong, G.K.-S., Yu, J., Wang, J., Bendixen, C., Fredholm, M., Brunak, S., Yang, H., Bolund, L. 2005, 'Pigs in Sequence Space: A 0.66X Coverage Pig Genome Survey based on Shotgun Sequencing', BMC Genomics, vol. 6 no. 70, Peer reviewed article
- Christiansen, C., Mailund, Pedersen, C.N.S., Randers, M. 2005, 'Quartet Distance between General Trees', in Proceedings of International Conference on Numerical Analysis and Applied Mathematics (ICNAAM), pp. 796-799.Conference article peer reviewed
- Besenbacher, S., Mailund, Westh-Nielsen, L., Pedersen, C.N.S. 2005, 'RBT—A Tool for Building Refined Buneman Trees', Bioinformatics, vol. 21 no. 8, pp. 1711-1712.Peer reviewed article
- Schierup, M.H., Jensen, T.M., Wiuf, C. 2005, 'The effect of a single recombination event', presented at Genomic Studies and the HapMap, Oxford, 15.3.2005 - 18.3.2005. Poster
- Billington, J., Gallasch, G.E., Kristensen, L.M., Mailund, 2004, 'Exploiting Equivalence Reduction and the Sweep-Line Method for Detecting Terminal States', IEEE Transactions on Systems Man and Cybernetics - Part A - Systems and Humans, vol. 34 no. 1, pp. 23-37.Peer reviewed article
- Mailund, T., Westergaard, M. 2004, 'Obtaining Memory-Efficient Reachability Graph Representations Using the Sweep-Line Method', in Proceedings of Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2004), pp. 177-191.Conference article peer reviewed
- Mailund, Pedersen, C.N.S. 2004, 'QDist—Quartet Distance Between Evolutionary Trees', Bioinformatics, vol. 20 no. 10, pp. 1636-1637.Peer reviewed article
- Mailund, Pedersen, C.N.S. 2004, 'QuickJoin—Fast Neighbour-Joining Tree Reconstruction', Bioinformatics, vol. 20 no. 17, pp. 3261-3262.Peer reviewed article
- Besenbacher, S., Mailund, T., Westh-Nielsen, L., Pedersen, C.S. 2004, 'RBT -- A tool for building refined Buneman trees', Bioinformatics, vol. doi:10.1093/bti195, pp. in press.Article
- Mailund, T. 2004, SplitDist—Calculating Split-Distances for Sets of Trees, Working paper/preprint
- Kristensen, L.M., Mailund, 2003, 'Efficient Path Finding with the Sweep-Line Method using External Storage', in Proceedings of International Conference on Formal Engineering Methods (ICFEM 2003), pp. 319-337.Conference article
- Brodal, G.S., Fagerberg, R., Mailund, T., Pedersen, C.N.S., Phillips, D. 2003, Speeding Up Neighbour-Joining Tree Construction, Working paper/preprint
- Mailund, Kristensen, L.M. 2002, 'A Compositional Sweep-Line State Space Exploration Method', in Proceedings of Formal Description Techniques for Distributed Systems and Communication Protocols (FORTE 2002), pp. 327-343.Conference article
- Mailund, Kristensen, L.M. 2002, 'A Generalised Sweep-Line Method for Safety Properties', in Proceedings of Formal Methods Europe (FME 2002), pp. 549-567.Conference article
- Mailund, 2006, 'Analysing Infinite-State Systems by Combining Equivalence Reduction and the Sweep-Line Method', in Proceedings of International Conference on Application and Theory of Petri Nets (ICATPN 2002), pp. 314-333.Conference article
- Gallasch, G.E., Kristensen, L.M., Mailund, 2002, 'Sweep-Line State Space Exploration for Coloured Petri Nets', in Proceedings of Fourth Workshop on Practical Use of Coloured Petri Nets and the CPN Tools (CPN 2002), pp. 101-119.Conference article
- Christensen, S., Kristensen, L.M., Mailund, 2001, 'A Sweep-Line Method for State Space Exploration', in Proceedings of Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2001), pp. 450-464.Conference article
- Christensen, S., Kristensen, L.M., Mailund, 2001, 'Condensed State Spaces for Timed Petri Nets', in Proceedings of International Conference on Application and Theory of Petri Nets (ICATPN 2001), pp. 101-120.Conference article
- Christensen, S., Jensen, K., Mailund, Kristensen, L.M. 2001, 'State space methods for coloured Petri nets', in Proceedings of the 2nd international colloquium on Petri net technologies for modelling communication based systems, pp. 14-15.Conference article
- Mailund, 2000, 'Separation of style and content with XML in an interchange format for high-level Petri nets', in Proceedings on the XML/SGML based interchange formats for Petri nets, pp. 7-12.Conference article
- Mailund, 1999, 'Parameterised coloured Petri nets', in Prorceedings of the second workshop on practical use of coloured Petri nets and Design/CPN, pp. 133-151.Conference article
- Mailund, Lyngsø, R.B. 1998, 'Textual interchange format for high-level Petri nets', in Proceedings of the first workshop on practical use of coloured Petri nets and Design/CPN, pp. 47-64.Conference article
Please note: The registration of research publications may be incomplete for publications prior to 2001, when ongoing registration was initiated. The registration of research communication was begun in 2005. A number of researchers have registered publications previously issued.